"I have an 2006 SN with the Excalibur motor, I only seem to have the filter in the FCC?"
You have two, one in the FCC and the other, hate to say it, is one the fuel line under the floor. between the transmission and the tank. To get at it you need to remove the back seat, unclip the hinges on the motorboat and remove that section of the floor. I have no idea why they did it this way but it is a major pain to change.