In snow skiing you have a similar problem. Actually, its really two problems. First, you need to get your footbeds and boot cuff aligned to your leg alignment, which is mostly a comfort/fit thing. Second, and most important though, is to get your knee over the middle of your foot or slightly inside for good geometry. That is done by tilting the boot sole with the wedges to the outsides of your feet. This  may seem counter-intuitive since you think you need to fill the space on the inside, but that actually causes over edging and a lack of stacking. Not sure how all this would work in the water but it does seem like it may help at least for the front foot.  Deke